PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003981-PA
Common NameOsI_02839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 1413aa    MW: 146882 Da    PI: 3.723
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003981-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD134.33.8e-1113231347125
           zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                        Cg+Cr+lL+Y+rGA +V+C++C+t+
  BGIOSGA003981-PA 1323 CGSCRILLAYFRGAGYVHCTCCQTM 1347
                        ***********************96 PP

2zf-LSD140.54.5e-1313611385125
           zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                        Cg+C tlL+YP+GAp+V+C+lC +V
  BGIOSGA003981-PA 1361 CGHCATLLMYPFGAPAVKCSLCLFV 1385
                        **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1013201350IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-713231346IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-813591386IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-1013611385IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 1413 aa     Download sequence    Send to blast
MPPRSRRLSP GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA  60
AAGAGQPGSP SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP  120
DSSYTESSPT RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA  180
PEPPTPPLES GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV  240
VAVSPEEAPG SRVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM  300
EVMYRENDTA AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP  360
VLESGEPDKA ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV  420
SEIQEEAPDS TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI  480
EVTSGETDTA AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS  540
PVLDSGDPDA AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV  600
VAGMQEEAPG SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM  660
EVMYGETGTA AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP  720
EMAPAGSENC KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMLEEAVESV PSSEALDVEK  780
PASITQAEPS SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR  840
PLPALEVTNM ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF  900
ENFKSSSEPC SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF  960
ENFKSSWPPL PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFG  1020
SGVESLQKPL PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT  1080
EPVSVIEEAP QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP  1140
DMVHSGCDNS EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAS  1200
TVPIRSSPLK NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA  1260
TTTDLVSTTA MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ  1320
MVCGSCRILL AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS  1380
LCLFVTEIGE RNVRRRLSIE QPTRTNSSGL AEA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.10210.0callus| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329753930.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621461.10.0PREDICTED: fibrous sheath CABYR-binding protein
TrEMBLA2WSJ70.0A2WSJ7_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA003981-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-29lsd one like 2